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BioPython使用MUSCLE

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Biopython —— Bio.Align.Applications


IP属地:广东1楼2017-02-17 19:54回复
    >>> from Bio.Align.Applications import MuscleCommandline
    >>> cline = MuscleCommandline(input="opuntia.fasta", out="opuntia.txt")
    >>> print cline


    IP属地:广东2楼2017-02-17 19:55
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      默认情况下,MUSCLE的输出文件将是包含间隔(gap)的FASTA格式文件。你也可以告诉MUSCLE来输出ClustalW-like的文件结果:
      >>> from Bio.Align.Applications import MuscleCommandline
      >>> cline = MuscleCommandline(input="opuntia.fasta", out="opuntia.aln", clw=True)
      >>> print cline


      IP属地:广东3楼2017-02-17 19:56
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        严格的ClustalW的输出文件:
        >>> from Bio.Align.Applications import MuscleCommandline
        >>> cline = MuscleCommandline(input="opuntia.fasta", out="opuntia.aln", clwstrict=True)
        >>> print cline


        IP属地:广东4楼2017-02-17 19:59
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          大佬,我的fasta文件要放在哪个路径下才能运行啊


          IP属地:北京5楼2020-03-28 14:44
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